PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66447.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 170aa MW: 19452.2 Da PI: 8.0669

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66447.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.00039	22	64	8	54
HHHHH.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrR.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r r R R+ i +++ eLrel+P++ +K s L k+++++ L EPS66447.1 22 RPRPRdRQLIQDRIKELRELVPNS-----EKCSIDGLLDKTIKHMLFL 64 5555548889*************7.....5666666777777766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.093	15	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.3E-5	28	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-5	28	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
SRLSRSNKRK DCSSSSDNNN QRPRPRDRQL IQDRIKELRE LVPNSEKCSI DGLLDKTIKH 60 MLFLRNVSDR ADKLRKHCCF QEADKMMVEE SGASWAVELG SSSSSSDAQT CPIVVKDLDQ 120 PGQMLIEMLC CDHGRFLEIT NAIHRLQLTV LHGVMEKSPP RESWARFIVE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that regulates root development; promotes the production of stele cells in roots. Coordinately controls the number of all vascular cell types by regulating the size of the pool of cells from which they arise. {ECO:0000269\|PubMed:17626058}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012832038.1	1e-69	PREDICTED: transcription factor LHW-like
Swissprot	Q9XIN0	3e-43	LHW_ARATH; Transcription factor LHW
TrEMBL	S8E2G4	1e-121	S8E2G4_9LAMI; Prf interactor 30137 (Fragment)
STRING	Migut.J00297.1.p	4e-69	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.3	8e-34	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Vera-Sirera F, et al. A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants. Dev. Cell, 2015. 35(4): p. 432-43 [PMID:26609958] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]