PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66593.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 181aa MW: 20036.8 Da PI: 10.3471

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66593.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.4e-08	72	119	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L ++++++Lq EPS66593.1 72 NHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDGIINHVQDLQ 119 8*************************9....777888888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.5E-15	66	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.38E-9	66	123	No hit	No description
PROSITE profile	PS50888	13.96	68	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-6	72	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-14	72	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-7	74	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
SNNGWIPIPA PFCFLRRFQI GIRTLASESI GRNSRSSFQV GDPTRKSGSN GGSSEKLPYV 60 HVRARRGQAT GNHSLAERAR REKINARMKL LQELVPGCNK ISGTALVLDG IINHVQDLQR 120 QVEFLSMRLA AVDPRIDFNL DHLIAAESAV AIDSSNGGVF SLPIWPENEI SLMTRQHHQC 180 Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009780308.1	2e-60	PREDICTED: transcription factor bHLH48-like isoform X2
Refseq	XP_016505589.1	2e-60	PREDICTED: transcription factor bHLH48-like isoform X2
Swissprot	Q8VZ02	7e-53	BH048_ARATH; Transcription factor bHLH48
TrEMBL	S8DTU9	1e-130	S8DTU9_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_006490044.1	4e-58	(Citrus sinensis)
STRING	Migut.K00063.1.p	2e-58	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-55	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]