PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66609.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

WRKY

Protein Properties

Length: 100aa MW: 12060.6 Da PI: 9.8744

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66609.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.5	3.2e-29	40	100	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK++ g+++prsYYrCt++ +C+++k+v+rs++dp+++e+tY+g+H ++ EPS66609.1 40 EDSYSWRKYGQKDILGAKYPRSYYRCTYRlmrHCWATKQVQRSDDDPTFFEVTYKGTHSCN 100 7*************************9999************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-28	27	100	IPR003657	WRKY domain
PROSITE profile	PS50811	21.092	34	100	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-26	36	100	IPR003657	WRKY domain
SMART	SM00774	3.5E-32	39	100	IPR003657	WRKY domain
Pfam	PF03106	3.6E-26	40	99	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
FFSKEKSKMN AISYRKRIQP VWREQVKIKT ENGLEEGPSE DSYSWRKYGQ KDILGAKYPR 60 SYYRCTYRLM RHCWATKQVQ RSDDDPTFFE VTYKGTHSCN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-19	27	98	7	75	Disease resistance protein RRS1
5w3x_D	2e-19	27	98	7	75	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551475.1	8e-47	probable WRKY transcription factor 53
Swissprot	Q8H0Y8	2e-41	WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBL	S8CHX8	9e-70	S8CHX8_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009613243.1	2e-44	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1843	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.2	4e-44	WRKY family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Duan S, et al. Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana. Plant Sci., 2018. 268: p. 47-53 [PMID:29362083]