PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66715.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 153aa MW: 17275.7 Da PI: 7.9511

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66715.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.9	1.3e-06	58	93	15	55
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++ L++llP++ +K++ a++Le A eYI+ Lq EPS66715.1 58 KLSDKTRSLQKLLPWD-----EKMDIATVLESAYEYIRFLQ 93 67778889*****9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.505	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.02E-6	47	97	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.1E-10	57	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-8	57	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
DDAYLNGAFA DVSFRSLLTY CSPPNPVYQT IPPDSHFPAK MMPYHHQKRR KLLPPQQKLS 60 DKTRSLQKLL PWDEKMDIAT VLESAYEYIR FLQAQVRALQ SMPSLACSSS PASYGTTILG 120 NLNQQQLLQV MINSESAQSH LYSTGCCVYS IDQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830415.1	2e-39	PREDICTED: transcription factor bHLH117
TrEMBL	S8CJ04	1e-110	S8CJ04_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010109560.1	2e-32	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11250	18	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	2e-19	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]