PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66755.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARR-B
Protein Properties Length: 186aa    MW: 20774.3 Da    PI: 10.3822
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66755.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.64.4e-26126179155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kp+l+W++ LH+rF+ea++ L G e+A+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  EPS66755.1 126 KPKLVWNNSLHNRFLEALRIL-GLERAVPKKILEVMNVPGLTRENVASHLQKYRI 179
                 79*******************.********************************6 PP
2Response_reg39.82.4e-144662890
                  EESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
  Response_reg 28 eaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90
                  +++++ +al +++ +  Dl++ D+ mp+m+G++l ++i++e ++lp+i+++a+++ ++  +++
    EPS66755.1  4 TVTNPNDALCTIRINGGDLVISDVYMPDMNGYQLQQKIAQEFSNLPVILMSAESNLDTSSRVI 66
                  688999999999999****************************************99987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011017.457183IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.20E-16380No hitNo description
Gene3DG3DSA:3.40.50.23001.3E-14384No hitNo description
SuperFamilySSF521722.99E-16383IPR011006CheY-like superfamily
PfamPF000723.5E-11466IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.606.9E-26124183IPR009057Homeodomain-like
SuperFamilySSF466899.86E-19124183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-24126179IPR006447Myb domain, plants
PfamPF002491.2E-5130178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
AAITVTNPND ALCTIRINGG DLVISDVYMP DMNGYQLQQK IAQEFSNLPV ILMSAESNLD  60
TSSRVICKPI KPEDLKGMLK SGVEADADEV VNQKKKKYNK KKGLKSKSNP NKGCEGKVVK  120
VSSTKKPKLV WNNSLHNRFL EALRILGLER AVPKKILEVM NVPGLTRENV ASHLQKYRIF  180
LRRVTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-23122185164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076492.23e-57two-component response regulator ARR10-like
TrEMBLS8CJ471e-133S8CJ47_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F01146.1.p3e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.11e-23response regulator 18
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]