PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66761.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

TCP

Protein Properties

Length: 303aa MW: 32379.4 Da PI: 9.9093

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66761.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.5	4.8e-38	55	163	2	109
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..kaaksaaks 97 a++k++++++hTkv+gR+RR+R++a caar+F+L+++LG+++d++ti WLl+ a+pai+e+tgt++++a ++ +++ + +s s + +a++sa ++ EPS66761.1 55 AAAKRSNKDRHTKVEGRGRRIRMPAACAARVFQLTRQLGHKSDGETIRWLLERAEPAIIEATGTGTIPAIAVsVNGALKIPTSPS--PsaAAEASASEP 151 789*************************************************************999996553222222222222..122222222233 PP TCP 98 kksqksaasaln 109 ++++++ as+++ EPS66761.1 152 QRRRRKRASNSE 163 333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.9E-31	60	146	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.785	61	115	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MESIHQNPPS PSLSRSQDNG SLENADRVRG QVAPRLKVED DACETNFVSC VQNKAAAKRS 60 NKDRHTKVEG RGRRIRMPAA CAARVFQLTR QLGHKSDGET IRWLLERAEP AIIEATGTGT 120 IPAIAVSVNG ALKIPTSPSP SAAAEASASE PQRRRRKRAS NSEFFDVKDQ SRFAPVTPIT 180 PQGLVSLFPS GTIFMIPPPT GVPSSGQFKP QFWAIPATAS PVFNIAARPG PAIGGAEIEA 240 VSGGRGQNQN DMSEIEITSA AAAAADPGQS SGNQISADFS LKIYDEKREI QFMGKEKKPS 300 PEP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076261.1	2e-93	transcription factor TCP19
Swissprot	Q9LT89	1e-62	TCP19_ARATH; Transcription factor TCP19
TrEMBL	S8CPH1	0.0	S8CPH1_9LAMI; Uncharacterized protein
STRING	Migut.F00395.1.p	1e-89	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-58	TCP family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]