PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66983.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NAC

Protein Properties

Length: 167aa MW: 19350.7 Da PI: 4.5283

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66983.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	122.5	3.7e-38	10	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lp+Gf+F Ptde l+ yL+kkv++++ + +++ evd+++ +P+ Lp ++k +++ wyf ++++++y +++ nrat +g+Wk+tg+d+++++k++ + EPS66983.1 10 LPVGFKFFPTDEHLLFIYLRKKVNNEEPPN-KTVLEVDLHTRDPSMLPDAAKLNSNGWYFTCRERREYGNEDGINRATMTGFWKSTGNDETIVDKNTGD 107 79***********************998.7899*********88888999*************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy++ +p+++ t+W+m eyrl EPS66983.1 108 VGMKKTLVFYTNGSPDAVMTSWTMYEYRL 136 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.09E-46	6	150	IPR003441	NAC domain
PROSITE profile	PS51005	41.94	10	152	IPR003441	NAC domain
Pfam	PF02365	3.5E-22	11	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MTLQQYLDTL PVGFKFFPTD EHLLFIYLRK KVNNEEPPNK TVLEVDLHTR DPSMLPDAAK 60 LNSNGWYFTC RERREYGNED GINRATMTGF WKSTGNDETI VDKNTGDVGM KKTLVFYTNG 120 SPDAVMTSWT MYEYRLQNPV DNNWVLCKVL DSSLPYEPPN PHDDIEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-32	9	149	16	162	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-32	9	149	16	162	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-32	9	149	16	162	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-32	9	149	16	162	NO APICAL MERISTEM PROTEIN
3swm_A	5e-32	9	149	19	165	NAC domain-containing protein 19
3swm_B	5e-32	9	149	19	165	NAC domain-containing protein 19
3swm_C	5e-32	9	149	19	165	NAC domain-containing protein 19
3swm_D	5e-32	9	149	19	165	NAC domain-containing protein 19
3swp_A	5e-32	9	149	19	165	NAC domain-containing protein 19
3swp_B	5e-32	9	149	19	165	NAC domain-containing protein 19
3swp_C	5e-32	9	149	19	165	NAC domain-containing protein 19
3swp_D	5e-32	9	149	19	165	NAC domain-containing protein 19
4dul_A	5e-32	9	149	16	162	NAC domain-containing protein 19
4dul_B	5e-32	9	149	16	162	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024162094.1	1e-45	protein CUP-SHAPED COTYLEDON 3-like
Refseq	XP_028103806.1	1e-45	NAC domain-containing protein 21/22-like
TrEMBL	S8DV02	1e-122	S8DV02_9LAMI; Uncharacterized protein
STRING	XP_009624737.1	2e-44	(Nicotiana tomentosiformis)
STRING	XP_004289955.1	1e-44	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	1e-36	NAC domain containing protein 74

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]