PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS66985.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HB-other

Protein Properties

Length: 187aa MW: 20458 Da PI: 8.2336

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS66985.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.7	2.6e-20	11	67	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR+ t+ qle+Le+ ++ + yps+++r++L++kl+Lt+rq ++WF+ rR k+kk EPS66985.1 11 RPKRQMKTPFQLEVLEKTYATEAYPSEATRQQLSAKLSLTDRQLQMWFCHRRLKDKK 67 679****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-19	3	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-18	5	68	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	8	68	IPR001356	Homeobox domain
SMART	SM00389	4.0E-18	10	72	IPR001356	Homeobox domain
Pfam	PF00046	7.7E-18	11	67	IPR001356	Homeobox domain
CDD	cd00086	5.11E-16	11	68	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
VNQTPPEGSK RPKRQMKTPF QLEVLEKTYA TEAYPSEATR QQLSAKLSLT DRQLQMWFCH 60 RRLKDKKEAG GTDKTDAVTT AIKQRVPLSG ATKGLTESFR EEQAAVNPGG GHMSGFSSGS 120 GSGSGSRSAE FDNGEAVPVL HPRYHDSPRM IMERRIIACV EAQLGEPIRQ DGPILGVEFD 180 ELPAGAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	67	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096357.1	3e-67	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	9e-45	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	S8CJX1	1e-136	S8CJX1_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M01107.1.p	1e-63	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	4e-43	homeobox-1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]