PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67020.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 198aa    MW: 22802.9 Da    PI: 9.6054
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67020.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.72e-35221661128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksg 81 
                 lp+G++F+Ptd+el+ e+L++kv   k       ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+           + 
  EPS67020.1  22 LPAGVKFDPTDQELI-EHLEAKVGVGKetkshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdhlqGGET 118
                 799************.99****9877755665443333333766646**********.555666799******************75655555443377 PP

         NAM  82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 +W++tgk+++vl+ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  EPS67020.1 119 RWHKTGKTRPVLA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 166
                 8************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3916185IPR003441NAC domain
PROSITE profilePS5100533.04622185IPR003441NAC domain
PfamPF023651.4E-1623166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
SKHCPNCGHK LDGKHCPDWV RLPAGVKFDP TDQELIEHLE AKVGVGKETK SHPLIDEFIP  60
TIEGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT RKRRKIQTEC DHLQGGETRW  120
HKTGKTRPVL ANGKQKGCKK ILVLYTNFGK NRKPEKTNWV MHQYHLGKHE EEKEGELVVS  180
KIFYQTQPRQ CNWSSERS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-132016613140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024179476.11e-129NAC domain-containing protein 75-like isoform X1
RefseqXP_024179477.11e-130NAC domain-containing protein 75-like isoform X2
RefseqXP_024179478.11e-130NAC domain-containing protein 75-like isoform X3
SwissprotQ9M0F81e-124NAC75_ARATH; NAC domain-containing protein 75
TrEMBLS8CK061e-145S8CK06_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc05g026180.1.11e-127(Solanum lycopersicum)
STRINGPGSC0003DMT4000435211e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-113NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]