PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67033.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 133aa    MW: 15529.5 Da    PI: 9.3257
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67033.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-162570147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
       EPS67033.1 25 RGHWRPAEDAKLKELVAIFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 70
                     899*****************************.***********996 PP
2Myb_DNA-binding58.81.2e-1877120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
       EPS67033.1  77 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 120
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9562071IPR017930Myb domain
SMARTSM007178.4E-142473IPR001005SANT/Myb domain
SuperFamilySSF466896.74E-2924118IPR009057Homeodomain-like
PfamPF002495.4E-162570IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-272678IPR009057Homeodomain-like
CDDcd001675.96E-122869No hitNo description
PROSITE profilePS5129427.28872126IPR017930Myb domain
SMARTSM007172.1E-1476124IPR001005SANT/Myb domain
PfamPF002494.0E-1577119IPR001005SANT/Myb domain
CDDcd001679.42E-1179119No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2179125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
NPEEDQDPAV PMHGCDGGGS KHCARGHWRP AEDAKLKELV AIFGPQNWNL IAEKLEGRSG  60
KSCRLRWFNQ LDPRINRRAF TEEEEERLMA AHRLYGNKWA MIARLFPGRT DNAVKNHWHV  120
IMARKYREQQ QQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-34191261108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307310.13e-75transcription factor MYB117
RefseqXP_015075753.13e-75transcription factor MYB105
SwissprotQ9SEZ43e-71MY105_ARATH; Transcription factor MYB105
TrEMBLS8DV423e-95S8DV42_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc05g007870.1.11e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-73myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]