PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67037.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 305aa    MW: 32270.8 Da    PI: 9.409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67037.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09104129227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt+lC+ f+    Ck+Gd+C+FaHg+
  EPS67037.1 104 KTRLCNKFSTPEGCKFGDKCHFAHGE 129
                 8***********************96 PP
2zf-CCCH35.71.5e-11271295126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC +fa+ G C +G+rC+FaHg
  EPS67037.1 271 FKTKLCENFAK-GSCTFGERCHFAHG 295
                 69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.8923765IPR000571Zinc finger, CCCH-type
SMARTSM003563.13764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-53863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-63962IPR000571Zinc finger, CCCH-type
PfamPF146082.64262No hitNo description
Gene3DG3DSA:4.10.1000.101.8E-14100133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-8100133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.516103130IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6104129IPR000571Zinc finger, CCCH-type
SMARTSM003560.022104129IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.7E-14169250IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.4E-15178248IPR004088K Homology domain, type 1
SMARTSM003228.5E-11179249IPR004087K Homology domain
PROSITE profilePS5008413.544180244IPR004088K Homology domain, type 1
PfamPF000136.0E-10182246IPR004088K Homology domain, type 1
CDDcd001057.69E-12184244No hitNo description
Gene3DG3DSA:4.10.1000.105.3E-16269301IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718270297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-8270301IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7270296IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-9271295IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDFGMDKKRA RAHTGINGNG GVKRSKQEME SFTSGIGSKS KPCTKFFSVS GCPFGEGCHF  60
LHYVPGGIKA VTQMLGNNPA FPATARNPVG PPSFPEVSSP PVVKTRLCNK FSTPEGCKFG  120
DKCHFAHGER ELGRPAVGPP PPMMPQEDPH GFGPLHGRYL GGHMDPTPPN MGSAAGFGAT  180
ATAKISIDAA MAGPLIGKGG VNSKHICRMT GAKLSVKDHE SDPNLRNIEL EGSFDQIKQA  240
SQMVREVLVN VSAFTGPGLR KGGGHEAGNN FKTKLCENFA KGSCTFGERC HFAHGAEELR  300
KAPGI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083138.11e-154zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R01e-103C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLS8E4260.0S8E426_9LAMI; Uncharacterized protein
STRINGXP_009803026.11e-142(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-48C3H family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]