PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67064.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 408aa MW: 46006.3 Da PI: 6.6828

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67064.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22	4.2e-07	162	183	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H EPS67064.1 162 FCGICGKGFKRDANLRMHMRGH 183 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.24E-5	159	186	No hit	No description
PROSITE profile	PS50157	11.759	161	188	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0091	161	183	IPR015880	Zinc finger, C2H2-like
Pfam	PF12874	9.6E-4	162	183	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-6	162	211	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	163	183	IPR007087	Zinc finger, C2H2
SMART	SM00355	74	209	242	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	19	247	269	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
DLIRQGHDHH DEPDDVKDWD PTKILNNLSF LEKKIHQLQD LVHLISGRRR RGGYTVRDSK 60 DEILIQQQQL ITADLTSVIV QLISTAGSLL PSARHHLPSG IVSNEKSKVE EDQSEPLPLP 120 LQGEDHEMRS DDDADDGESL PPGSYEILQL EKDEILAPHT HFCGICGKGF KRDANLRMHM 180 RGHGDEYKTP EALAKPNKES SEPVLIKRYS CPYVGCKRNK DHKKFQPLKT ILCVKNHFKR 240 THCDKNYTCS RCNAKKFSVV ADLKTHEKHC GRDKWLCSCG TTFSRKDKLF GHIGLFQGHS 300 PAIPSEDARG NDHPEYGEAA AAKVEQPDSG FDVENNNGGG DDHHHHHHHH QGRFFPAPCF 360 DASSSGGYRE FPRPPNFDDC ESSLAFLVSG PCEYLPKDRK YDGDTSME

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

DLIRQGHDHH DEPDDVKDWD PTKILNNLSF LEKKIHQLQD LVHLISGRRR RGGYTVRDSK  60
DEILIQQQQL ITADLTSVIV QLISTAGSLL PSARHHLPSG IVSNEKSKVE EDQSEPLPLP  120
LQGEDHEMRS DDDADDGESL PPGSYEILQL EKDEILAPHT HFCGICGKGF KRDANLRMHM  180
RGHGDEYKTP EALAKPNKES SEPVLIKRYS CPYVGCKRNK DHKKFQPLKT ILCVKNHFKR  240
THCDKNYTCS RCNAKKFSVV ADLKTHEKHC GRDKWLCSCG TTFSRKDKLF GHIGLFQGHS  300
PAIPSEDARG NDHPEYGEAA AAKVEQPDSG FDVENNNGGG DDHHHHHHHH QGRFFPAPCF  360
DASSSGGYRE FPRPPNFDDC ESSLAFLVSG PCEYLPKDRK YDGDTSME

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097108.1	1e-175	LOW QUALITY PROTEIN: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	1e-157	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	S8CJ73	0.0	S8CJ73_9LAMI; Uncharacterized protein (Fragment)
STRING	VIT_18s0072g00840.t01	1e-170	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4754	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-160	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]