PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67083.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 254aa MW: 28289.1 Da PI: 9.7235

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67083.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.7	7.5e-19	28	111	1	82
trihelix 1 rWtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rWt++e+l+Li+++r e+r++ g ++ p+W ++s+++ ++r p qC+++w+nl+++++kik++e++ +++s s +++ EPS67083.1 28 RWTQKEILVLIQGKRAAENRVGIGPastgsgQISPKWCSISNYC----VNRCPAQCRKRWSNLSGDFRKIKAWESEVKEGSDSFWAMR 111 8*******************864444555********9....799***********************988888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.2E-7	28	111	No hit	No description
PROSITE profile	PS50090	6.771	28	87	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.3E-7	28	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.22E-5	29	96	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MLFESLSPGR DPVDGGAGSK AAAARLPRWT QKEILVLIQG KRAAENRVGI GPASTGSGQI 60 SPKWCSISNY CVNRCPAQCR KRWSNLSGDF RKIKAWESEV KEGSDSFWAM RKDSRRERKL 120 PGSFDREVYD ILSGADAGQE GVGRSSVKRK WTAPIPISGL NCAISSPRHS IFITAPEKHY 180 PSEDPPRAGR EKCEFEYELV VAALESNGRL LRPRLEAQNA NLRLEREQRD EHLNRLSTVL 240 DKVADAVCRI ADKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086880.2	5e-70	LOW QUALITY PROTEIN: trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-65	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	S8DV89	0.0	S8DV89_9LAMI; Uncharacterized protein
STRING	XP_006410499.1	5e-66	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-68	Trihelix family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]