PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67172.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 205aa    MW: 23128 Da    PI: 8.7343
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67172.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.5e-18100134135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  EPS67172.1 100 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 134
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-1794144IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.25594130IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-1596131IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.43E-1597158No hitNo description
CDDcd002021.99E-1499146No hitNo description
PfamPF003205.9E-16100134IPR000679Zinc finger, GATA-type
PROSITE patternPS003440100125IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
EEMAELEWLS NFQEESFSSE DLETLHLLQG IQTPTENPTH FDSASNPNLC SGPQPSVSAK  60
AARSKRPRAP PDDWTSRLLT VGKKASPREK EAAEIAGRKC LHCATDKTPQ WRTGPMGPKT  120
LCNACGVRYK SGRLVPEYRP AASPTFVLSK HSNSHRKVLE LRRQKELVRA QQQSPYHQNM  180
VYDVASNGED FFIHHYVGAE FRRLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267189.11e-85PREDICTED: GATA transcription factor 12-like
SwissprotO826329e-70GATA9_ARATH; GATA transcription factor 9
TrEMBLS8E4C71e-153S8E4C7_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_010267189.14e-85(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-66GATA transcription factor 9
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]