PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67373.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NF-YB

Protein Properties

Length: 237aa MW: 25908.3 Da PI: 9.1087

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67373.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	187.3	1.1e-58	91	187	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre+eg++ EPS67373.1 91 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLNRYREMEGDS 187 69*********************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-54	88	202	IPR009072	Histone-fold
SuperFamily	SSF47113	1.02E-40	94	199	IPR009072	Histone-fold
Pfam	PF00808	3.8E-28	97	161	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.2E-20	125	143	No hit	No description
PROSITE pattern	PS00685	0	128	144	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.2E-20	144	162	No hit	No description
PRINTS	PR00615	2.2E-20	163	181	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MTLDFGVRPM FRIRYTCLKT IIIIATDIII IKQFSQLQHP HDSRPSHPSS PPSSTSRGLR 60 FDSMADYQGA PGSPAGGSHE SGGDQSPRGG VREQDRFLPI ANISRIMKKA LPANGKIAKD 120 AKETVQECVS EFISFITSEA SDKCQREKRK TINGDDLLWA MATLGFEDYI DPLKVYLNRY 180 REMEGDSKGS GKSGDGSSRK DGIQQAAAAQ GSFSQGIGYV NSQRGGHMMV PMRGGME

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	8e-47	91	182	1	92	Transcription factor HapC (Eurofung)
4g92_B	8e-47	91	182	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094723.1	3e-99	nuclear transcription factor Y subunit B-8
Swissprot	Q8VYK4	1e-81	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	S8DW41	1e-175	S8DW41_9LAMI; Uncharacterized protein
STRING	XP_009620316.1	1e-95	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	1e-72	nuclear factor Y, subunit B8

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]