PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67436.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 118aa    MW: 13954 Da    PI: 11.2843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67436.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.7e-151258147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed  l+++v+ +G+ +W++Ia++++ +R++k+c++rw++ 
       EPS67436.1 12 RGHWRPSEDFELKQLVAVYGPQNWNLIAQKLQGRRSGKSCRLRWFNQ 58
                     899*****************************9***********996 PP
2Myb_DNA-binding56.65.7e-1865107145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+
       EPS67436.1  65 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWH 107
                      678*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6759IPR017930Myb domain
SMARTSM007176.6E-121161IPR001005SANT/Myb domain
PfamPF002497.2E-151258IPR001005SANT/Myb domain
SuperFamilySSF466892.4E-2712106IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-241366IPR009057Homeodomain-like
CDDcd001671.04E-91557No hitNo description
PROSITE profilePS5129427.03260114IPR017930Myb domain
SMARTSM007176.4E-1464112IPR001005SANT/Myb domain
PfamPF002491.3E-1465107IPR001005SANT/Myb domain
CDDcd001673.61E-1067107No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2167113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
GSGSLRSKIC SRGHWRPSED FELKQLVAVY GPQNWNLIAQ KLQGRRSGKS CRLRWFNQLD  60
PRINRRAFSE EEEERLMAAH RLYGNKWAMI ARLFPGRTDN AVKNHWHIVM ARKYRETS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121137107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001307310.12e-69transcription factor MYB117
RefseqXP_016571686.12e-69PREDICTED: uncharacterized protein LOC107869748
SwissprotQ9SEZ44e-67MY105_ARATH; Transcription factor MYB105
TrEMBLS8CRG18e-83S8CRG1_9LAMI; Uncharacterized protein (Fragment)
STRINGERM945276e-69(Amborella trichopoda)
STRINGSolyc05g007870.1.17e-69(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-69myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]