PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67749.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 189aa MW: 21493.5 Da PI: 8.4738

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67749.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.3e-06	110	148	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++ + L++l+ + +K + a++L +A+eYIk+L+ EPS67749.1 110 RKERLGDRVNALQQLVSPF-----GKTDTASVLHEAIEYIKYLH 148 5566777778888888887.....8*****************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.684	98	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	99	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-5	99	151	No hit	No description
SuperFamily	SSF47459	2.22E-11	103	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MIGGSEFIRP QTGFEISRRD SSSSPFFSTD AGGYCIWDQQ QQGYFRDLNS AVCMPPGNEI 60 PVRFLRSSEP PPYMPKASNF ISKEENQQEE TCKKEPPLKK RPRAAVLQVR KERLGDRVNA 120 LQQLVSPFGK TDTASVLHEA IEYIKYLHDQ LDVLLSSPYF KNKSHHHKQE GCLMSRGLCL 180 TPISVKDFI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003580620.1	4e-30	transcription factor bHLH112
Swissprot	Q94JL3	2e-22	BH112_ARATH; Transcription factor bHLH112
Swissprot	Q9LT67	6e-23	BH113_ARATH; Transcription factor bHLH113
TrEMBL	S8CKM4	1e-139	S8CKM4_9LAMI; Uncharacterized protein
STRING	BRADI5G22920.1	1e-29	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	3e-25	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chen HC, et al. The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis. Plant Mol. Biol., 2017. 94(4-5): p. 531-548 [PMID:28631168]