PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67764.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Protein Properties

Length: 167aa MW: 19132.8 Da PI: 9.8413

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67764.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.8	1.2e-15	82	165	1	90
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp f+++h ++++++++l de+g ++ k+ k++ l++GW++F+ +++L +gD +vF+l++ ++f EPS67764.1 82 FVKPMLQSHVTGGFWLGLPLGFCKRHL--PRRDVMMKLIDEEGGEFLAKYLSLKTG----LSGGWRGFAMDHELVDGDAIVFQLTEPTTF 165 89**********************6..56899************666665....*********************9764444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	4.32E-21	76	167	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-16	76	167	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.32E-23	80	167	No hit	No description
Pfam	PF02362	4.7E-13	82	165	IPR003340	B3 DNA binding domain
SMART	SM01019	3.9E-15	82	167	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.632	82	167	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
KKVIRKPSEQ SLDLRRSRRV ADLPPKSYKE NAVEPQGKAR RSGHRRDLSN RVYASDEDRE 60 YATHRAEELQ SKLDQDTNYP SFVKPMLQSH VTGGFWLGLP LGFCKRHLPR RDVMMKLIDE 120 EGGEFLAKYL SLKTGLSGGW RGFAMDHELV DGDAIVFQLT EPTTFKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836952.1	5e-79	PREDICTED: B3 domain-containing protein At3g19184 isoform X1
Swissprot	Q1G3M3	1e-60	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	S8CKP0	1e-120	S8CKP0_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.B00334.1.p	2e-78	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-63	B3 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]