PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67789.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 177aa MW: 18773.8 Da PI: 8.7269

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67789.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.3e-39	11	70	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k+ +cprCdstntkfCyynny+lsqPr+fCkaCrryWt GG+lrn+PvGgg+rk+ +ss EPS67789.1 11 GKHHPCPRCDSTNTKFCYYNNYNLSQPRHFCKACRRYWTLGGTLRNIPVGGGTRKSTSSS 70 57889**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.5E-33	13	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.751	14	68	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-19	15	58	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	16	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MKSSSSSPAP GKHHPCPRCD STNTKFCYYN NYNLSQPRHF CKACRRYWTL GGTLRNIPVG 60 GGTRKSTSSS KRRRVGEDDV AVNMMVMGGG RNGRGGVPDS SAAVINNKAA AAAAAAVASE 120 PSDSGLKSQD AVGLSPFNGG FDQGFFSWPN IEELTAGAGG DYGEYFSWPE LATETHL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	74	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8CKR5	1e-129	S8CKR5_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	5e-26	OBF binding protein 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]