PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67815.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 516aa MW: 56054.3 Da PI: 4.5636

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67815.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	430.5	1.3e-131	146	516	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlta 98 lv++L++cAea++++d+ela+al++++ la++++ +m+++aayf+eALa+r+++ + p+ +++ +s + al++ f+e++P+lkf+h+ta EPS67815.1 146 LVHTLVACAEAIQQEDAELAEALVKNIGFLAASQAGAMRKVAAYFAEALARRIYGLRP------PAAAAAAGDSGFTDDALQMnFYEACPYLKFAHFTA 238 689**************************************************222......22222223344444455555*********** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrv 196 NqaIlea++g++rvH+iDf ++qG+QWpaLl+aLa Rp+gpp +R+Tgv +s++ e+g+rLa++Ae ++v+f+++ + va+++++l+ ++L+v EPS67815.1 239 NQAILEAFAGKSRVHVIDFTMKQGMQWPALLHALALRPGGPPAVRLTGVRY---SSRDGSAEIGWRLARLAEDVEVEFKYEEItVADSIAELDSSMLDV 334 **********************************************9...5899*******************996777******** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.......eerikvEre 288 ++gEa+aVn+v++lhrll++++s++ vLklv++l+P++++vveqea+h+++ Fl+rf eal+yys+lfdsle+++++++ +e++ + ++ EPS67815.1 335 REGEAVAVNSVFELHRLLSRPGSIDG----VLKLVRELKPEILTVVEQEANHGGNIFLDRFNEALHYYSTLFDSLESGAAAAAaadgsatDEDRLMTEV 429 **************88888888....*****************************************988554444455677899999999 PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +lgr+i+++vacega+r+erhetl++Wr+r+++ GF+pv+l+++++kqa lll ++ +dgyrvee++g+l+lgW++rpL+++SaW+ EPS67815.1 430 YLGRQICDIVACEGADRVERHETLAQWRARFGSRGFTPVRLGSNVYKQAILLLGLFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 516 9***********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	4.4E-26	2	68	IPR021914	Transcriptional factor DELLA, N-terminal
SMART	SM01129	5.1E-24	2	76	No hit	No description
PROSITE profile	PS50985	64.355	120	495	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-129	146	516	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
FDEAFAVLGY NVKSSDMAEV AEKIQQLDEA MGSFEREGLS QLLASDAVHY NPSDLCSWLE 60 SMISGLNPLS GFESSPDPFL DSSTASVNSC PPRIDLDFGS DLISIPGEAI YPRPPAKRAR 120 YPVSVEPPPA AARSLLVDSQ ENGIRLVHTL VACAEAIQQE DAELAEALVK NIGFLAASQA 180 GAMRKVAAYF AEALARRIYG LRPPAAAAAA GDSGFTDDAL QMNFYEACPY LKFAHFTANQ 240 AILEAFAGKS RVHVIDFTMK QGMQWPALLH ALALRPGGPP AVRLTGVRYS SRDGSAEIGW 300 RLARLAEDVE VEFKYEEITV ADSIAELDSS MLDVREGEAV AVNSVFELHR LLSRPGSIDG 360 VLKLVRELKP EILTVVEQEA NHGGNIFLDR FNEALHYYST LFDSLESGAA AAAAADGSAT 420 DEDRLMTEVY LGRQICDIVA CEGADRVERH ETLAQWRARF GSRGFTPVRL GSNVYKQAIL 480 LLGLFAGGDG YRVEENDGCL MLGWHTRPLI ATSAWK

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

FDEAFAVLGY NVKSSDMAEV AEKIQQLDEA MGSFEREGLS QLLASDAVHY NPSDLCSWLE  60
SMISGLNPLS GFESSPDPFL DSSTASVNSC PPRIDLDFGS DLISIPGEAI YPRPPAKRAR  120
YPVSVEPPPA AARSLLVDSQ ENGIRLVHTL VACAEAIQQE DAELAEALVK NIGFLAASQA  180
GAMRKVAAYF AEALARRIYG LRPPAAAAAA GDSGFTDDAL QMNFYEACPY LKFAHFTANQ  240
AILEAFAGKS RVHVIDFTMK QGMQWPALLH ALALRPGGPP AVRLTGVRYS SRDGSAEIGW  300
RLARLAEDVE VEFKYEEITV ADSIAELDSS MLDVREGEAV AVNSVFELHR LLSRPGSIDG  360
VLKLVRELKP EILTVVEQEA NHGGNIFLDR FNEALHYYST LFDSLESGAA AAAAADGSAT  420
DEDRLMTEVY LGRQICDIVA CEGADRVERH ETLAQWRARF GSRGFTPVRL GSNVYKQAIL  480
LLGLFAGGDG YRVEENDGCL MLGWHTRPLI ATSAWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-67	141	515	13	377	Protein SCARECROW
5b3h_D	2e-67	141	515	13	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070609.1	0.0	DELLA protein GAI1
Swissprot	Q8S4W7	0.0	GAI1_VITVI; DELLA protein GAI1
TrEMBL	S8CM42	0.0	S8CM42_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.E00445.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2126	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	0.0	GRAS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]