PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67843.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRF
Protein Properties Length: 117aa    MW: 13397.1 Da    PI: 10.5093
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67843.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.71.3e-2564108145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+
  EPS67843.1  64 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEQ 108
                 79****************************************997 PP
2QLQ63.26.5e-22339137
         QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                ++FTa+Q+++L++Q+l+yKy++an+P+P++Ll +i+k
  EPS67843.1  3 GPFTASQWMELEHQALIYKYINANVPIPSYLLDPIRK 39
                59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.8E-11339IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.4E-16438IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.758439IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.41764108IPR014977WRC domain
PfamPF088795.3E-2265107IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
VRGPFTASQW MELEHQALIY KYINANVPIP SYLLDPIRKP FQSAAFRSTP FGWGGFQLGF  60
SNSDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKPVEQQS GHAASSS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074333.24e-66growth-regulating factor 6
SwissprotQ6AWY34e-55GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLS8DX634e-83S8DX63_9LAMI; Uncharacterized protein (Fragment)
STRINGPGSC0003DMT4000126662e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16882357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.17e-55growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  4. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]