PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67918.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Protein Properties

Length: 139aa MW: 16051.6 Da PI: 8.4976

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67918.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.9	3.8e-18	36	126	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k +++s+v++ +l lpkkf+e+h+ + ++ ++l +e+g++++ ++ gry l++GW++F +++L gD+++F+l++ +f +v+++r+ EPS67918.1 36 FVKFMLHSNVGQGFWLHLPKKFCEAHMPD--HDTNVSLVNEWGKEYRATFL----LGRYGLSAGWRGFSISHRLLKGDILIFHLIQPCKF--KVHIVRA 126 89**********************755..5668***********4....44567***********************98888..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-24	30	127	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.2E-21	31	127	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.60E-25	34	125	No hit	No description
Pfam	PF02362	2.4E-15	36	126	IPR003340	B3 DNA binding domain
SMART	SM01019	2.7E-19	36	127	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.731	36	127	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
KRTRFFDLYD DDEARYSVIE RAGELLSGLE NDLPHFVKFM LHSNVGQGFW LHLPKKFCEA 60 HMPDHDTNVS LVNEWGKEYR ATFLLGRYGL SAGWRGFSIS HRLLKGDILI FHLIQPCKFK 120 VHIVRANKSD VMGAALCLM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088278.1	2e-73	B3 domain-containing protein At5g42700 isoform X2
TrEMBL	S8DXB4	2e-99	S8DXB4_9LAMI; Uncharacterized protein (Fragment)
STRING	Solyc01g108130.2.1	8e-63	(Solanum lycopersicum)
STRING	PGSC0003DMT400066321	7e-63	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-36	B3 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]