PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68000.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Nin-like

Protein Properties

Length: 197aa MW: 22775.6 Da PI: 10.1292

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68000.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	68.9	7.1e-22	111	160	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+dls+yF+lp+ AAke+++c++++K iCR+ G+kRWPhRki+s+ EPS68000.1 111 GKMKLKDLSEYFHLPMWVAAKEMKICQSAIKGICRKAGLKRWPHRKIRSI 160 6899********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.358	95	180	IPR003035	RWP-RK domain
Pfam	PF02042	7.1E-19	113	160	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
PIPISAWPVT PSPYSCSCCQ TLREIAHVNG AHVMKLEVHG SLGVISHAVL QKFFVYGHRN 60 LESHMFDFCN ETIWKVKQFL IEYCEDRKRE GYTMLPDPLS KQKGYPRERT GKMKLKDLSE 120 YFHLPMWVAA KEMKICQSAI KGICRKAGLK RWPHRKIRSI QRKIAKTKEQ LGSGNADERS 180 SALTQLQELQ RKLSNIY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011081629.1	7e-77	uncharacterized protein LOC105164634 isoform X1
TrEMBL	S8CMQ7	1e-146	S8CMQ7_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_006474671.1	9e-54	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-12	RWP-RK domain-containing protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]