PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68080.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 258aa    MW: 28509.7 Da    PI: 6.5109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68080.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.7e-31133191259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs+fpr+YYrC+s+  C+++k+ver++++p+++++tY+geHnh+
  EPS68080.1 133 SDVWCWRKYGQKPIKGSPFPRGYYRCSSSkLCMARKQVERDKSNPEMFVVTYTGEHNHP 191
                 79*************************9979***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29126193IPR003657WRKY domain
PROSITE profilePS5081132.742127193IPR003657WRKY domain
SuperFamilySSF1182901.11E-25128193IPR003657WRKY domain
SMARTSM007748.1E-37132192IPR003657WRKY domain
PfamPF031061.7E-25134191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDDDWDLHAV VRGCGSSASI AGPADTLLPP SSTAPGVDTS SPVSTPWLPN PFEPRELNDL  60
QTQFLSPPKI AVSDRNTPPP PFLQQLAKQF PDPQQVQRKQ LPSRSSHGST RKSRKRKSVV  120
KNVCLVDAEN LSSDVWCWRK YGQKPIKGSP FPRGYYRCSS SKLCMARKQV ERDKSNPEMF  180
VVTYTGEHNH PAPAHRNSLA GTTRPRPTSE EEEEEEKAAE MFAPTEAAWD DDFFVGIEAF  240
TCDEGDVRSP ANFHGGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-19117194280Disease resistance protein RRS1
5w3x_D5e-19117194280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020220494.12e-60WRKY transcription factor 22
TrEMBLS8CMY10.0S8CMY1_9LAMI; Uncharacterized protein
STRINGXP_004308337.12e-58(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-54WRKY family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]