PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68099.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 207aa MW: 23977.9 Da PI: 6.6037

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68099.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.8	8e-25	34	131	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdqle 86 +Wt+++v++Li+a+++++e+ ++ +kk++W++vsk+++ergf +sp+qC++k+++lnkryk+++e+ +++t +e++++ +++d ++ EPS68099.1 34 KWTDRMVRLLITAVSYINEETPPENvamlrrkhsnlQKKGKWKSVSKVLAERGFFVSPQQCEDKFNDLNKRYKRLNEILGRGTcCEVVENPSLLDLMD 131 7************999888876666677777888********************************************7689999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.1E-22	32	157	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
KGKSSSDKDD SSFADEIPVT VKGKKLSSTW HRVKWTDRMV RLLITAVSYI NEETPPENVA 60 MLRRKHSNLQ KKGKWKSVSK VLAERGFFVS PQQCEDKFND LNKRYKRLNE ILGRGTCCEV 120 VENPSLLDLM DHVSEKLKDE VKKILSSKHL HYEEMCSYHN GNRLHLPPDP ELQHSLQLAI 180 SSRDDHDENE SKVDQETDMD DDQEESR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022874487.1	1e-100	uncharacterized protein LOC111393267 isoform X2
TrEMBL	S8CLQ9	1e-151	S8CLQ9_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009590352.1	4e-97	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-79	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]