PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68109.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB_related
Protein Properties Length: 414aa    MW: 48592.2 Da    PI: 9.9564
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68109.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08207250147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++W++eE e  +++ k++G+  Wk+ a ++g  R + ++k+ w++ 
       EPS68109.1 207 KKKWSQEEYEMVLNYQKEHGNQ-WKALADELG--RHRIHVKDTWRQI 250
                      689*****************99.********8..9999****99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.193129189IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-5132197IPR009057Homeodomain-like
SMARTSM007170.001133204IPR001005SANT/Myb domain
PROSITE profilePS512949.498202255IPR017930Myb domain
SMARTSM007170.004206253IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-8206250IPR009057Homeodomain-like
SuperFamilySSF466892.09E-8207268IPR009057Homeodomain-like
PfamPF139213.7E-9210268No hitNo description
PROSITE profilePS500907.282252320IPR017877Myb-like domain
SMARTSM007170.0025256322IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-7256320IPR009057Homeodomain-like
SuperFamilySSF466895.59E-7300378IPR009057Homeodomain-like
PROSITE profilePS500907.7322375IPR017877Myb-like domain
SMARTSM0071738326377IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
NNGFKNEKKK KMKKEKKSLQ NDGIVELVGS KNKKHDNGTT TVNATAENRR KIHKSKKKKR  60
HLDSEGAAEN GAKQKKKKKL KDRQQAKIDD NPNAKRHKKK KVRFSSEVEI FHIPVDDSDK  120
EVVGTDDEDK LIRGKRFTKE EDDMIKEAVS NYVEHHDLGE KGLEMVLNSR QHPTLRGCWK  180
EIGSALPHRP YSAVYYRAQI LLRRKDKKKW SQEEYEMVLN YQKEHGNQWK ALADELGRHR  240
IHVKDTWRQI KLENMRKGHW SQQEYQKLFD LVNVDLQNKV SEEKRSKHGM LRDNICWTAI  300
SDVLSTRTLS SCCIKWYNQL TSPLVKEGLW ADTDDYRLLL ALHELDSTCS EDVDWDNLVE  360
ERSGEICRRR WNQMVLHIGN HGNKSFSEQV EVLAKRYCPS LLQARMEWDS KPLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15778KKRHLDSEGAAENGAKQKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101318.11e-172RNA polymerase I termination factor
TrEMBLS8CLS30.0S8CLS3_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009760244.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-125MYB_related family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]