PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68222.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB

Protein Properties

Length: 725aa MW: 82131.1 Da PI: 8.4899

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68222.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.6	6.8e-14	11	56	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l EPS68222.1 11 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 56 78***************************.**********986 PP
2	Myb_DNA-binding	33.3	1.1e-10	63	106	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l EPS68222.1 63 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 106 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	5	60	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-18	8	59	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	9	58	IPR001005	SANT/Myb domain
CDD	cd00167	5.28E-12	13	56	No hit	No description
Pfam	PF13921	3.3E-13	13	73	No hit	No description
SuperFamily	SSF46689	7.55E-21	36	110	IPR009057	Homeodomain-like
CDD	cd11659	1.21E-30	58	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-14	60	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.443	61	110	IPR017930	Myb domain
SMART	SM00717	1.7E-12	61	108	IPR001005	SANT/Myb domain
Pfam	PF11831	7.2E-52	409	653	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence Send to blast
VAKMRIMIKG GVWKNTEDEI LKAAVMKYGK NQWARISSLL VRKSAKQCKA RWYEWLDPSI 60 KKTEWTREED EKLLHLAKLM PTQWRTIAPI VGRTPSQCLE RYEKLLDAAC AKDENYEPGD 120 DPRKLRPGEI DPNPESKPAR PDPVDMDEDE KEMLSEARAR LANTRGKKAK RKAREKQLEE 180 ARRLASLQKR RELKAAGMHV RHRKKKRKGI DYNAEIPFEK RPPPGFYDVA EEDRPAEYIR 240 FPTTIQDLEG ERRVDKESRL RKQDIAKNRI AQRQDAPSAI LQANKLNDPE SVRKRSRLNL 300 PAPQIPDHEL EAIAKIGIAS DMINHDELTE GSAATRALLA SYAQTPQIGM TPLRTPQRTP 360 AGKQDAIMME AENQRRLTLS QTPLLGGENP ILHPSDFSGV TPRKKDIATP NLLLTPSATP 420 GGITPRVGMT PSRDGYSFGV TPKATPMRDE LRINEGPDVG DNGKSRQSEL KKELISGLKS 480 LPQPKNEYQF VIQPLLEENE EQEEKIEEDM SDRLAIEKAE EAARQQELLK KRSKVLQREE 540 LPRPPAASVD LIRDSLTRAV EDKSSFVPPT LLEQADELIR RELLSLLEHD NAKYPLDENS 600 GKEKRKGGKR VSNGKSGPVP SIDDFEETEL NEADELVKKE SESIRSAMGH DGESPAEYIE 660 AHQTCLNDMM YFPTRDGYGL SSVANNAEKL AALQSEFDNV KRKMDDETKK AQKHEQKLKV 720 LTNGY

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence Send to blast

VAKMRIMIKG GVWKNTEDEI LKAAVMKYGK NQWARISSLL VRKSAKQCKA RWYEWLDPSI  60
KKTEWTREED EKLLHLAKLM PTQWRTIAPI VGRTPSQCLE RYEKLLDAAC AKDENYEPGD  120
DPRKLRPGEI DPNPESKPAR PDPVDMDEDE KEMLSEARAR LANTRGKKAK RKAREKQLEE  180
ARRLASLQKR RELKAAGMHV RHRKKKRKGI DYNAEIPFEK RPPPGFYDVA EEDRPAEYIR  240
FPTTIQDLEG ERRVDKESRL RKQDIAKNRI AQRQDAPSAI LQANKLNDPE SVRKRSRLNL  300
PAPQIPDHEL EAIAKIGIAS DMINHDELTE GSAATRALLA SYAQTPQIGM TPLRTPQRTP  360
AGKQDAIMME AENQRRLTLS QTPLLGGENP ILHPSDFSGV TPRKKDIATP NLLLTPSATP  420
GGITPRVGMT PSRDGYSFGV TPKATPMRDE LRINEGPDVG DNGKSRQSEL KKELISGLKS  480
LPQPKNEYQF VIQPLLEENE EQEEKIEEDM SDRLAIEKAE EAARQQELLK KRSKVLQREE  540
LPRPPAASVD LIRDSLTRAV EDKSSFVPPT LLEQADELIR RELLSLLEHD NAKYPLDENS  600
GKEKRKGGKR VSNGKSGPVP SIDDFEETEL NEADELVKKE SESIRSAMGH DGESPAEYIE  660
AHQTCLNDMM YFPTRDGYGL SSVANNAEKL AALQSEFDNV KRKMDDETKK AQKHEQKLKV  720
LTNGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	5	725	3	724	Cell division cycle 5-like protein
5xjc_L	0.0	5	725	3	724	Cell division cycle 5-like protein
5yzg_L	0.0	5	725	3	724	Cell division cycle 5-like protein
5z56_L	0.0	5	725	3	724	Cell division cycle 5-like protein
5z57_L	0.0	5	725	3	724	Cell division cycle 5-like protein
5z58_L	0.0	5	725	3	724	Cell division cycle 5-like protein
6ff4_L	0.0	5	725	3	724	Cell division cycle 5-like protein
6ff7_L	0.0	5	725	3	724	Cell division cycle 5-like protein
6icz_L	0.0	5	725	3	724	Cell division cycle 5-like protein
6id0_L	0.0	5	725	3	724	Cell division cycle 5-like protein
6id1_L	0.0	5	725	3	724	Cell division cycle 5-like protein
6qdv_O	0.0	5	725	3	724	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	207	KRRELKAAGMHVRHRKKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084262.1	0.0	cell division cycle 5-like protein isoform X1
Refseq	XP_020550967.1	0.0	cell division cycle 5-like protein isoform X2
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	S8E730	0.0	S8E730_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.F01544.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6139	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]