PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68274.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 175aa MW: 19871 Da PI: 9.7451

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68274.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.6e-10	6	51	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+ R+++ ++f L +++P + kKl+K+++L A++Y+k Lq EPS68274.1 6 HIIAERKCREQLGQCFLALSTIVPGL-----KKLDKSSVLGDAIKYMKFLQ 51 899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.043	1	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.03E-15	4	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.76E-9	6	55	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-14	6	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-8	6	51	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-10	7	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
SQTYDHIIAE RKCREQLGQC FLALSTIVPG LKKLDKSSVL GDAIKYMKFL QEKVKLLEEH 60 ATKKSFESVI LLKKNNPTPA DGNEFRVSNS PEERSLPEIE ARSHNSQILI KIHCAHHRGI 120 LANIIYNVEK LNLRILNTST TSFARISLHV TLHAEMEKEF NSTVKEVVVR IRAAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073652.1	1e-67	transcription factor bHLH18-like
TrEMBL	S8CM85	1e-124	S8CM85_9LAMI; Uncharacterized protein (Fragment)
STRING	Aquca_010_00012.1	3e-52	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1760	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-43	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]