PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68316.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 164aa    MW: 17858.7 Da    PI: 9.0581
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68316.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84e-189108198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k l+ sd+++ grlvlpkk+ae++   + ++e++ l + d++g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ + ++++lv++
  EPS68316.1   9 FEKMLSASDAGRIGRLVLPKKCAEAYfpPIAHPEGFPLNVLDTNGKAWVFQFRFwpNNNSRMYVLE-GITPCIQSLQLQAGDIVIFSRLE-QKGTLVMG 105
                 89**************************666678899***************9989999999***9.********************765.67777777 PP

                 EE- CS
          B3  96 vfr 98 
                  ++
  EPS68316.1 106 GRK 108
                 665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.54E-206104IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-286113IPR015300DNA-binding pseudobarrel domain
CDDcd100174.02E-227108No hitNo description
SMARTSM010198.4E-179110IPR003340B3 DNA binding domain
PROSITE profilePS5086310.5889110IPR003340B3 DNA binding domain
PfamPF023623.8E-159107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
EKAVLTPLFE KMLSASDAGR IGRLVLPKKC AEAYFPPIAH PEGFPLNVLD TNGKAWVFQF  60
RFWPNNNSRM YVLEGITPCI QSLQLQAGDI VIFSRLEQKG TLVMGGRKTP ATQSVEKGVE  120
CTIATTNVLG IGDSCARNSI GVPISFNCQV RGKVVENSPV SHPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-54510819122B3 domain-containing transcription repressor VAL1
5yzz_C2e-54510819122B3 domain-containing transcription repressor VAL1
5z00_C2e-54510819122B3 domain-containing transcription repressor VAL1
5z00_G2e-54510819122B3 domain-containing transcription repressor VAL1
5z00_K2e-54510819122B3 domain-containing transcription repressor VAL1
5z00_M2e-54510819122B3 domain-containing transcription repressor VAL1
6j9a_A2e-54510820123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096215.12e-70B3 domain-containing protein Os07g0563300
SwissprotQ0D5G41e-53Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
SwissprotQ6Z3U31e-53Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLS8CTV01e-118S8CTV0_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01204.1.p1e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.15e-55HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]