PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68326.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 158aa    MW: 18133.2 Da    PI: 10.6885
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68326.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.64.9e-062039120
                EEETTTTEEESSHHHHHHHH CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                ++C++C k+F+r  n++ H+
  EPS68326.1 20 FSCHICRKTFNRYNNMQMHM 39
                89*****************9 PP
2zf-C2H213.20.00027104128123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 + C    Cgk+F  k + ++H +++
  EPS68326.1 104 FACRkfGCGKTFAVKGDWRTHEKNC 128
                 679999***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.91E-6143No hitNo description
Gene3DG3DSA:3.30.160.605.3E-52039IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.9932047IPR007087Zinc finger, C2H2
SMARTSM003550.82042IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
SMARTSM003551006699IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-590126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.62E-590126No hitNo description
SMARTSM0035542104126IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
CGKRYWIPTP SQILVGPLQF SCHICRKTFN RYNNMQMHMW GHGSEFRKGP ESLRGSQPAA  60
MLRLPCYCCV SGCKNNVNFP KAKALKDFRT LQTHYKRKHG AKAFACRKFG CGKTFAVKGD  120
WRTHEKNCGK RWFCACGSDF KHKRSLKDHV KSFGKGHA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090357.12e-98zinc finger protein WIP3
RefseqXP_016577931.15e-98PREDICTED: zinc finger protein WIP3
RefseqXP_019199011.15e-98PREDICTED: zinc finger protein WIP3-like
SwissprotQ8W0312e-93ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLS8CTW61e-114S8CTW6_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009609728.12e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.18e-96WIP domain protein 5
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]