PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68359.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family M-type_MADS
Protein Properties Length: 109aa    MW: 12667.9 Da    PI: 10.6397
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68359.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.56.5e-221154245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                r e+ s rqvt+ kRr+gilKKA+E+SvLCd+++ +++fs+tgk
  EPS68359.1 11 RLESLSSRQVTYGKRRAGILKKAQEISVLCDIDIVLLMFSPTGK 54
                678999************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-28261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.703262IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-26396IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-18424IPR002100Transcription factor, MADS-box
PfamPF003199.0E-191356IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-182439IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-183960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
KMGRVKLKIQ RLESLSSRQV TYGKRRAGIL KKAQEISVLC DIDIVLLMFS PTGKPSIFRG  60
QRSNLDEMIA KYAQLTPKER AKRRLESLET LKRNFKKLDQ DVDIEEFLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17293190MEF2 CHIMERA
6byy_B1e-17293190MEF2 CHIMERA
6byy_C1e-17293190MEF2 CHIMERA
6byy_D1e-17293190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071694.16e-70agamous-like MADS-box protein AGL65 isoform X1
RefseqXP_011071696.17e-70agamous-like MADS-box protein AGL65 isoform X2
SwissprotQ7X9I03e-46AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLS8CMJ35e-72S8CMJ3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.I00190.1.p4e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-48AGAMOUS-like 65
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]