PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68404.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 95aa    MW: 11183.7 Da    PI: 11.0716
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68404.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.4e-21659356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                k+++++++q+++Le+ Fe+   +  e+r eLA+ lgL+ rqV+vWFqNrRa++k
  EPS68404.1  6 KKRRLSPDQVRTLERSFESGDRLEPERRMELARGLGLEPRQVSVWFQNRRARWK 59
                45689************************************************9 PP
2HD-ZIP_I/II121.34.9e-39595191
  HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                 ekkrrls +qv++LE+sFe+ ++Leper++elar Lgl+prqv vWFqnrRAR+k+kqlEkdyeaL+r+++++++ n++L++++++L +++
   EPS68404.1  5 EKKRRLSPDQVRTLERSFESGDRLEPERRMELARGLGLEPRQVSVWFQNRRARWKAKQLEKDYEALRRELQEIRALNDALKTHNNKLVSQV 95
                 69*************************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.54161IPR001356Homeobox domain
SMARTSM003899.0E-19465IPR001356Homeobox domain
SuperFamilySSF466892.09E-20571IPR009057Homeodomain-like
PfamPF000461.1E-18659IPR001356Homeobox domain
CDDcd000861.09E-13662No hitNo description
Gene3DG3DSA:1.10.10.602.7E-21768IPR009057Homeodomain-like
PRINTSPR000318.1E-73241IPR000047Helix-turn-helix motif
PROSITE patternPS0002703659IPR017970Homeobox, conserved site
PRINTSPR000318.1E-74157IPR000047Helix-turn-helix motif
PfamPF021831.2E-86195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
GGGGEKKRRL SPDQVRTLER SFESGDRLEP ERRMELARGL GLEPRQVSVW FQNRRARWKA  60
KQLEKDYEAL RRELQEIRAL NDALKTHNNK LVSQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15361RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151416.23e-40homeobox-leucine zipper protein HAT7
SwissprotA2XD085e-39HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
SwissprotQ8S7W95e-39HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBLS8CMM36e-61S8CMM3_9LAMI; Uncharacterized protein (Fragment)
STRINGLPERR03G04660.12e-40(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.18e-41HD-ZIP family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]