PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68410.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 151aa    MW: 17034.5 Da    PI: 10.7426
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68410.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-1786120135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C + kTp+WR+gp g+ktLCnaCG++y++ +l
  EPS68410.1  86 CWHCESDKTPQWREGPMGPKTLCNACGVRYKSGRL 120
                 99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.4E-1580130IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-1583143No hitNo description
Gene3DG3DSA:3.30.50.109.9E-1584118IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011410.72684116IPR000679Zinc finger, GATA-type
CDDcd002021.10E-1185132No hitNo description
PfamPF003201.3E-1586120IPR000679Zinc finger, GATA-type
PROSITE patternPS00344086111IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
EEELEWLSNR DAFPPLESCF GILSDNPNLI PNQTSPVSVL RSAKPPPSKP RTLRSRKRRT  60
TFTTPVVKEA SSSAAAASEV GMRKRCWHCE SDKTPQWREG PMGPKTLCNA CGVRYKSGRL  120
LPEYRPANSP TFCSLLHSNS HRKVVQMRKR K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15459SRKRRT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073745.17e-55GATA transcription factor 1-like
SwissprotQ6DBP81e-35GAT11_ARATH; GATA transcription factor 11
SwissprotQ8LAU99e-36GATA1_ARATH; GATA transcription factor 1
TrEMBLS8CNX31e-106S8CNX3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.G00615.1.p3e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-36GATA transcription factor 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]