PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68469.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 129aa    MW: 14990.5 Da    PI: 10.5115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68469.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.5e-085374426
                ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                 +Cr++++ G C+ G++C+F+H+
  EPS68469.1 53 QPCRHYLK-GKCNQGEKCNFSHD 74
                58******.*************7 PP
2zf-CCCH23.31.1e-07108128525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +Cr++  +G+C++G+ C F+H
  EPS68469.1 108 PCRNYVSSGFCRRGSDCLFSH 128
                 7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.6474976IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-45075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-75074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-55374IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-65374IPR000571Zinc finger, CCCH-type
SMARTSM003560.006978104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.45578102IPR000571Zinc finger, CCCH-type
PfamPF146080.05689102No hitNo description
PROSITE profilePS5010313.159103129IPR000571Zinc finger, CCCH-type
SMARTSM003565.9106129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5108128IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5108128IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
EDDAGKKKRK RPLTKEKRDR KKKKERMKRA EKNRELGVKR LKLPPVSKPI AKQPCRHYLK  60
GKCNQGEKCN FSHDVVPLTK SKPCGHFALN NCMKGDECPF DHQLSKYPCR NYVSSGFCRR  120
GSDCLFSHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1823RKRPLTKEKRDRKKKK
2923KRPLTKEKRDRKKKK
31624KRDRKKKKE
41924RKKKKE
51941RKKKKERMKRAEKNRELGVKRLK
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619049.12e-54PREDICTED: uncharacterized protein LOC104111140 isoform X2
RefseqXP_009619050.17e-55PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4
RefseqXP_009619051.17e-55PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4
RefseqXP_009619052.17e-55PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4
RefseqXP_016484962.18e-55PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X3
RefseqXP_016484963.18e-55PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X3
RefseqXP_019233114.18e-55PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X3
SwissprotQ9LTS73e-37C3H65_ARATH; Zinc finger CCCH domain-containing protein 65
TrEMBLS8CMS73e-88S8CMS7_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009619048.18e-54(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]