PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68470.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HSF

Protein Properties

Length: 157aa MW: 18799.5 Da PI: 11.3279

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68470.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.2	3.7e-35	5	97	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk++e+++d++++++isws + +sfvv+d++ f++++Lpk+Fkh+nf+SFvRQLn+Y F+k++ + weF+++ F++gk+ell++ik EPS68470.1 5 FLKKTFEMVDDPSTDSIISWSPTRTSFVVWDTHAFSSHLLPKHFKHNNFSSFVRQLNTYRFRKIDPGR---------WEFANEGFRQGKRELLRYIK 92 9******************999************************************9988.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ EPS68470.1 93 RRKQS 97 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	8.5E-57	1	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.8E-34	2	94	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.0E-37	2	94	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.3E-19	5	28	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.4E-31	5	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-19	43	55	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	44	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.3E-19	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
GPAPFLKKTF EMVDDPSTDS IISWSPTRTS FVVWDTHAFS SHLLPKHFKH NNFSSFVRQL 60 NTYRFRKIDP GRWEFANEGF RQGKRELLRY IKRRKQSSRY RAPKSDSERK GLETQVWKLK 120 QQQQRLVRYV ARFGEHLRAV ELKQRRMLLL LLSSSED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-22	5	97	20	123	Heat shock factor protein 1
5d5u_B	1e-22	5	94	29	129	Heat shock factor protein 1
5d5v_B	1e-22	5	94	29	129	Heat shock factor protein 1
5d5v_D	1e-22	5	94	29	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016580278.1	6e-58	PREDICTED: heat stress transcription factor A-2-like
Swissprot	Q9SV12	6e-51	HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBL	S8CP31	1e-111	S8CP31_9LAMI; Heat shock factor (Fragment)
STRING	Solyc07g040680.2.1	3e-57	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5681	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51910.1	1e-52	heat shock transcription factor A7A

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guan Q,Yue X,Zeng H,Zhu J The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. Plant Cell, 2014. 26(1): p. 438-53 [PMID:24415771] Nie S,Yue H,Xing D A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance. Plant Physiol., 2016. [PMID:26099269]