PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68530.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HSF
Protein Properties Length: 160aa    MW: 18772.2 Da    PI: 10.1965
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68530.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.22.6e-33141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+ + +++sws++g sfvv+++ e+a+ +LpkyFkh+nf+SF+RQLn+YgF+kv  e+         weF+++ F +g ++ll++i+
    EPS68530.1  14 FLSKTYEMVDDPLTCRIVSWSQSGLSFVVWNPPELARVLLPKYFKHNNFSSFIRQLNTYGFRKVVPEQ---------WEFANEGFFRGGRSLLKNIR 101
                   9****************************************************************998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    EPS68530.1 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-339103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-5610103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.5E-3610103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.6E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.7E-4120154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MDGSNGSSNS PAPFLSKTYE MVDDPLTCRI VSWSQSGLSF VVWNPPELAR VLLPKYFKHN  60
NFSSFIRQLN TYGFRKVVPE QWEFANEGFF RGGRSLLKNI RRRKPVHSHS GAFTDSERDV  120
FEKEIERLKR EKNSLQSEVE KYRHENRLYE NQLRVLAKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26310319129Heat shock factor protein 1
5d5v_B2e-26310319129Heat shock factor protein 1
5d5v_D2e-26310319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554487.13e-82heat stress transcription factor A-4b
SwissprotQ6K6S53e-59HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLS8CP791e-115S8CP79_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.H02116.1.p2e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84352329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-57heat shock factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]