PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68577.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HB-other

Protein Properties

Length: 218aa MW: 23717 Da PI: 8.1266

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68577.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21	5.8e-07	82	123	2	43
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 r+ ++ t++++ +Le++F++ ryp+++++ L+ ++g+t q EPS68577.1 82 RSHHRCTPNEIVILERAFAEGRYPDQNTKSLLSGQTGMTVHQ 123 566789********************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-7	64	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.55E-6	76	124	IPR009057	Homeodomain-like
CDD	cd00086	3.34E-5	82	123	No hit	No description
Pfam	PF00046	1.5E-4	82	123	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MVYGSFILLR SDRNYAAWLT ERRTVAIILR CLRSSDYCKA AGKNISVNLL GKKDFGAFGM 60 ELAAGSSGGG VRAGGGDNPN QRSHHRCTPN EIVILERAFA EGRYPDQNTK SLLSGQTGMT 120 VHQARAEIDK LRPQNIICPI CAAALGGANM SHISMISSGF TISSDLCGGS LVKIAIEKLV 180 DHVDLIEERE FVFITYSQIE TIDNRRSAAD GTDYIMRA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	S8E814	1e-160	S8E814_9LAMI; Uncharacterized protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]