PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68800.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 119aa MW: 12993.9 Da PI: 9.538

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68800.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00016	21	55	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A eYI L EPS68800.1 21 NLTARIAALQQLVSPY-----GKTDTASVLLEALEYITFL 55 67779999**9999.....9*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.715	6	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-11	6	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	15	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
SVEPKRLKAT SFSSSKDKKE NLTARIAALQ QLVSPYGKTD TASVLLEALE YITFLHEQVK 60 VLSAPYLRTA PWRSPNDDEE KCGLKSKGLC LVPLSFTLGV ANSNGADIWA PVKNSPMKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091560.1	2e-52	transcription factor bHLH113 isoform X1
Refseq	XP_011091561.1	2e-52	transcription factor bHLH113 isoform X2
Refseq	XP_011091562.1	2e-52	transcription factor bHLH113 isoform X2
Swissprot	Q7XJU1	2e-43	BH154_ARATH; Transcription factor bHLH154
Swissprot	Q7XJU2	2e-43	BH153_ARATH; Transcription factor bHLH153
TrEMBL	S8CPW8	1e-81	S8CPW8_9LAMI; Uncharacterized protein (Fragment)
STRING	Solyc08g014120.2.1	2e-48	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10428	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	9e-46	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]