PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68918.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family AP2
Protein Properties Length: 139aa    MW: 16239.1 Da    PI: 10.5855
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68918.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.71.4e-13763155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  EPS68918.1  7 SQYRGVTRHRWTGRYEAHLWDnTCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 63
                78*******************77776664346655.77******************98 PP
2AP224.37.7e-08106138136
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                 s y+GV+++++ grW A+I  +     +k  +lg+f
  EPS68918.1 106 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 138
                 57****************988532...5******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-10763IPR001471AP2/ERF domain
CDDcd000185.10E-15770No hitNo description
SuperFamilySSF541714.84E-15772IPR016177DNA-binding domain
SMARTSM003808.0E-20877IPR001471AP2/ERF domain
PROSITE profilePS5103217.016871IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-13871IPR001471AP2/ERF domain
PRINTSPR003674.7E-5920IPR001471AP2/ERF domain
PRINTSPR003674.7E-55373IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-6106139IPR016177DNA-binding domain
SMARTSM003800.025107139IPR001471AP2/ERF domain
PROSITE profilePS5103210.178107139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-5107139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
TFGHRTSQYR GVTRHRWTGR YEAHLWDNTC KKEGQTRKGR QGGYDMEEKA ARAYDLAALK  60
YWGPSSNINF SLENYHEELQ EMKGMTRLEY IAHLRRKSSG FSRGASIYRG VTRHHQHGRW  120
QARIGRVAGN KDLYLGTFS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021890465.12e-89AP2-like ethylene-responsive transcription factor ANT, partial
SwissprotQ84Z026e-90CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLS8DZY82e-98S8DZY8_9LAMI; Uncharacterized protein (Fragment)
STRINGPOPTR_0002s11550.13e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-85AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]
  3. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]