PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68966.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 160aa    MW: 16721.4 Da    PI: 7.9327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68966.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000426284123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+ksF++   L  H  +H
  EPS68966.1 62 FACKTCSKSFPSFQALGGHRASH 84
                78**********99999998887 PP
2zf-C2H211.60.00087125147123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg  F +   L  H+r+H
  EPS68966.1 125 HVCSICGAGFGSGQALGGHMRRH 147
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-86184No hitNo description
SMARTSM003550.256284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5566289IPR007087Zinc finger, C2H2
PfamPF139121.2E-126286IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-8120147No hitNo description
PfamPF139123.8E-12124149IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099125152IPR007087Zinc finger, C2H2
SMARTSM003550.045125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MIAGKRPSPA SSSTGEASEI SSASDAVFHF DRDAEEEEED MANCLILLAE GHRRNSNQSE  60
IFACKTCSKS FPSFQALGGH RASHKKPAKA AQRVDSPPAD ESPISSSAQI SGGLTSDSQN  120
RARVHVCSIC GAGFGSGQAL GGHMRRHRPA TAAANGGQNR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077299.15e-40zinc finger protein ZAT5
SwissprotQ681X47e-29ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLS8CVJ31e-112S8CVJ3_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.L01720.1.p2e-35(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.12e-20C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]