PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS69011.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HD-ZIP

Protein Properties

Length: 205aa MW: 23078 Da PI: 8.4953

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS69011.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	54	108	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ ++++eLA +l L+ rqV vWFqNrRa+ k EPS69011.1 54 RKKLRLSKEQAAVLEETFKEHNTLNPKQKKELAVRLLLKPRQVEVWFQNRRARTK 108 788899***********************************************98 PP
2	HD-ZIP_I/II	121.9	3.2e-39	54	143	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+++LEe+F+e+++L+p++K+ela +L l+prqv+vWFqnrRARtk+kq E+d+e+L+r++++l++en+rL+kev+eLr +l EPS69011.1 54 RKKLRLSKEQAAVLEETFKEHNTLNPKQKKELAVRLLLKPRQVEVWFQNRRARTKLKQAEVDCEYLRRCCENLTQENRRLQKEVSELR-AL 143 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	5.3E-8	4	32	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	4.7E-18	39	108	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.1E-17	48	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.925	50	110	IPR001356	Homeobox domain
SMART	SM00389	1.2E-13	52	114	IPR001356	Homeobox domain
CDD	cd00086	9.13E-14	54	111	No hit	No description
Pfam	PF00046	6.1E-16	54	108	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
Pfam	PF02183	6.5E-10	110	144	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.9E-24	110	153	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
AATAIDGDEE PPMASSPNST VSSLSGKRSE REENDGERAS SSLEIDDGGD AEARKKLRLS 60 KEQAAVLEET FKEHNTLNPK QKKELAVRLL LKPRQVEVWF QNRRARTKLK QAEVDCEYLR 120 RCCENLTQEN RRLQKEVSEL RALKLSPQFY MNMSPPTTLA MCPQCERVVN VPSSSPPSAA 180 PRHLHRPNSW ASMFPSLPAS DAHRP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089804.1	1e-103	homeobox-leucine zipper protein HAT4
Swissprot	P46602	1e-74	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	S8CVM6	1e-148	S8CVM6_9LAMI; Uncharacterized protein (Fragment)
STRING	Solyc01g090460.2.1	3e-92	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1118	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	1e-76	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]