PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69041.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 152aa    MW: 17962.7 Da    PI: 10.0728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69041.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.49.5e-5631301129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppG+rFhPtdee++veyL+kk+ ++++++  +i e+d++k+ePwdLpkk k +ekew+fF++rd+ky+tg+r+nrat+sgyWkatgkdke++++++ l
  EPS69041.1   3 LPPGYRFHPTDEEIIVEYLTKKAIDRRFTA-VAIGEADLNKCEPWDLPKKGKMGEKEWFFFFQRDRKYPTGTRTNRATTSGYWKATGKDKEIFKRRNCL 100
                 79*************************999.67***************999999********************************************* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfy+grapkgek+dWvmheyrle
  EPS69041.1 101 VGMKKTLVFYRGRAPKGEKSDWVMHEYRLE 130
                 ****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-612151IPR003441NAC domain
PROSITE profilePS5100557.2263151IPR003441NAC domain
PfamPF023651.1E-274129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
GNLPPGYRFH PTDEEIIVEY LTKKAIDRRF TAVAIGEADL NKCEPWDLPK KGKMGEKEWF  60
FFFQRDRKYP TGTRTNRATT SGYWKATGKD KEIFKRRNCL VGMKKTLVFY RGRAPKGEKS  120
DWVMHEYRLE GDIDLSRIDK DEWVVCKVFN KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-54215214169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424734.16e-86NAC domain-containing protein 100
SwissprotQ9FK442e-83NAC87_ARATH; NAC domain-containing protein 87
TrEMBLS8CVQ41e-108S8CVQ4_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_008240446.15e-84(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.17e-86Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]