PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69097.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 255aa    MW: 27761.6 Da    PI: 6.6385
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69097.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-056890123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+++F++k ++  H+r H
  EPS69097.1 68 FQCKNCPRRFTSKKSMYGHQRIH 90
                89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.7E-41841IPR007087Zinc finger, C2H2
SuperFamilySSF576674.99E-71828No hitNo description
PROSITE profilePS501579.5981846IPR007087Zinc finger, C2H2
SMARTSM003551.61841IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802041IPR007087Zinc finger, C2H2
SuperFamilySSF576674.99E-75994No hitNo description
Gene3DG3DSA:3.30.160.602.5E-66094IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1136895IPR007087Zinc finger, C2H2
SMARTSM003550.00616890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM003550.88211233IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-5212235IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGGRNSDEWN FPAEPRCYVC DHCGRSFKCG KSLGGHVSSG HARATKIGHG HANDGNSSAA  60
THSGAGEFQC KNCPRRFTSK KSMYGHQRIH SKNKCIENDV VVVPEVDAAG AGEKYSGVDA  120
RDIYAALKLL EIKRFALETP PANSTATATK RPLENEDGCS ATTTADGEDD DDDDDDDDYI  180
SEFESRAKAH EPRREALPEN ISGGGGPEVK FYCKICHEGF GSPQAVGGHM SRHRQRPSEE  240
ESEMKVKIKI KFNGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8E9D60.0S8E9D6_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.19e-06C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]