PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69130.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 188aa    MW: 21275.2 Da    PI: 9.9115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69130.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.1e-53141411128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k+  + +ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++ ++e
  EPS69130.1  14 LPPGFRFHPTDEELVVHYLKKKIASAPLPA-SIIAEVDLYKFDPWELPSKAIFGGQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVMTSgGTE 111
                 79****************************.89***************7766789***************************************96777 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  vg+kk Lvfy+g+ p+g k++W+mheyrl
  EPS69130.1 112 RVGVKKALVFYNGKPPRGIKSNWIMHEYRL 141
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-658176IPR003441NAC domain
PROSITE profilePS5100562.01514176IPR003441NAC domain
PfamPF023657.5E-2915141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MESTDSSAGG QPNLPPGFRF HPTDEELVVH YLKKKIASAP LPASIIAEVD LYKFDPWELP  60
SKAIFGGQEW YFFSPRDRKY PNGARPNRAA TSGYWKATGT DKPVMTSGGT ERVGVKKALV  120
FYNGKPPRGI KSNWIMHEYR LVDNNKPSSK PPGCDIANKK TSLRLDDWVL CRIYQKNNLQ  180
RAMDQERD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-7551786170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012842207.11e-119PREDICTED: NAC transcription factor 25
SwissprotQ9LD441e-103NAC56_ARATH; NAC transcription factor 56
TrEMBLS8CQT41e-138S8CQT4_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M00864.1.p1e-119(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-96NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]