PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69290.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family LBD
Protein Properties Length: 128aa    MW: 14267.4 Da    PI: 9.9075
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69290.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.23.1e-39211201100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rrkC++dC+lapyfp++++++f n+h+lFG+sn++k++++l++  +++am++++y++++ra dPv G+++++++l+++++ +kael+ + +
  EPS69290.1  21 ACAACKYQRRKCVSDCILAPYFPHDSQRQFLNAHRLFGVSNIIKIVRHLNPPAKDHAMRTIIYQSDVRAADPVGGCYRIVRELEHRIALAKAELDIVLH 119
                 7*********************************************************************************************99877 PP

      DUF260 100 e 100
                 +
  EPS69290.1 120 Q 120
                 6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.24520121IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-3721116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
PPPNSKNHHR GSSSSSSTTQ ACAACKYQRR KCVSDCILAP YFPHDSQRQF LNAHRLFGVS  60
NIIKIVRHLN PPAKDHAMRT IIYQSDVRAA DPVGGCYRIV RELEHRIALA KAELDIVLHQ  120
LALCRAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-24121152105LOB family transfactor Ramosa2.1
5ly0_B6e-24121152105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072642.25e-68LOB domain-containing protein 7-like isoform X1
RefseqXP_020548603.15e-68LOB domain-containing protein 7-like isoform X2
SwissprotQ9LRW13e-49LBD22_ARATH; LOB domain-containing protein 22
TrEMBLS8CR703e-89S8CR70_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.D00966.1.p3e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99262126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-51LOB domain-containing protein 22
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]