PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69330.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family NAC
Protein Properties Length: 165aa    MW: 18731.8 Da    PI: 4.4225
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69330.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.78.9e-2791161128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrF+Ptd+el+ ++L+++   ++    ++i+++ ++ ++PwdLp k+ +e  +wyf+s++ +        +r+t++g+W   g d++++s +g++
  EPS69330.1   9 LPPGFRFNPTDQELLLHFLCRS---RP----NIIPDLAVFPYDPWDLPGKAMGEGGKWYFYSRKTR--------KRVTENGRWLVAGVDEPIYS-GGRK 91 
                 79*****************974...33....569**************77667788******9877........589*****************.99** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g kk   fy+g+    +kt+W+m+ey l
  EPS69330.1  92 IGHKKYWGFYRGE----TKTNWIMQEYGL 116
                 **********543....489*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-397129IPR003441NAC domain
PROSITE profilePS5100530.9759131IPR003441NAC domain
PfamPF023651.0E-1710115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
DNSDSDFNLP PGFRFNPTDQ ELLLHFLCRS RPNIIPDLAV FPYDPWDLPG KAMGEGGKWY  60
FYSRKTRKRV TENGRWLVAG VDEPIYSGGR KIGHKKYWGF YRGETKTNWI MQEYGLCSDR  120
SEWVVCKVYD AGGGDSDGEG GGAAELSCLD EVFLSIDDLE EDEIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-2821308167Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092697.15e-60NAC domain-containing protein 104 isoform X1
RefseqXP_020553092.15e-60NAC domain-containing protein 104 isoform X1
RefseqXP_020553093.15e-60NAC domain-containing protein 104 isoform X1
SwissprotQ8GWK61e-58NC104_ARATH; NAC domain-containing protein 104
TrEMBLS8CRE41e-118S8CRE4_9LAMI; Uncharacterized protein (Fragment)
STRINGBra031915.1-P7e-59(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-56xylem NAC domain 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]