PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69379.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 116aa    MW: 12325.9 Da    PI: 10.2931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69379.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-182068355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ykGVr +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  EPS69379.1 20 YKGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 68
                9*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-351982IPR001471AP2/ERF domain
PROSITE profilePS5103222.1151976IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-221978IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-301977IPR001471AP2/ERF domain
PfamPF008471.0E-112068IPR001471AP2/ERF domain
PRINTSPR003671.1E-112031IPR001471AP2/ERF domain
CDDcd000184.19E-242077No hitNo description
PRINTSPR003671.1E-115878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEDDGGGGGG GGGRRNEKTY KGVRMRKWGK WVAEIREPNK RSRIWLGSYS TPVAAARAYD  60
TAVYYLRGPT AKLNFPEEIS EGRLKDLSPG AIREKAAEVG ARVDALLTGG GGGGLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1620821578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840786.11e-51PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ8W3M31e-45RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLS8CQF96e-75S8CQF9_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.L00172.1.p5e-51(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.13e-47related to AP2 9
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]