PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS69558.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 98aa MW: 10855.2 Da PI: 10.6218

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS69558.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H EPS69558.1 27 FSCNYCRRKFFSSQALGGHQNAH 49 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.46E-7	24	54	No hit	No description
PROSITE profile	PS50157	11.302	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
PPPPPEPKCP SGEDTATAHH RHRSRIFSCN YCRRKFFSSQ ALGGHQNAHK RERSLAKRAN 60 QIGLFSDRYT SLASLPLNGL ATPPPYRSLG VEAHASIH

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.
UniProt	May play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269\|PubMed:24808098, ECO:0000305\|PubMed:8980531}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269\|PubMed:10794528}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893198.1	3e-34	zinc finger protein 4-like
Refseq	XP_023893199.1	3e-34	zinc finger protein 4-like
Refseq	XP_023893200.1	3e-34	zinc finger protein 4-like
Refseq	XP_023893201.1	3e-34	zinc finger protein 4-like
Refseq	XP_023893202.1	3e-34	zinc finger protein 4-like
Swissprot	Q39263	7e-21	ZFP4_ARATH; Zinc finger protein 4
Swissprot	Q42485	5e-21	ZFP1_ARATH; Zinc finger protein 1
TrEMBL	S8E1M1	2e-65	S8E1M1_9LAMI; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_2.142	2e-33	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	6e-23	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]