PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS69596.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 433aa MW: 46497.4 Da PI: 10.1032

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS69596.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	198	218	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 +C+ Cg+sFs ++ L+rH EPS69596.1 198 PCQRCGESFSKWEALERHHVA 218 6*****************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.681	197	225	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	199	220	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.03E-20	222	433	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.4E-9	222	424	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
EKKKKKEGGS TTTMNWFSWR KPSMIYCKSE PSEVHNPEAA SKSKKKKKQQ QQQLLSSVLT 60 KKSGGGGGGG GGGRSGCSRS IANLKDVVIH GSKRHLQVER PPSCSPRSIG SSEFLNPITH 120 EVILSNNSRC ELKITGCHEA LRTSSAGGSA AAFVGTLRPG TPGPGPAPPR RGGKEGTVPP 180 AVTTKRPSVE NGAVLLLPCQ RCGESFSKWE ALERHHVASH AVTELAEGDS SRKIVEIICR 240 SSWPKSEQPR RCVRIERVLK VHNMQRTVGR FEEYREAVKA KAGKLAKKHP RCLADGNELL 300 RFYGTTVACS LGLNGSSSLC AADKCSVCRI IKDGFCSKRE ISGGGGGGIG VFTTSSSETA 360 LESIDECPGT RKALIVCRVI AGRVHRPLEN IQEIAGQIGF DSLAGKVGLY SNIEELYLLN 420 PKALLPCFVI VCR

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

EKKKKKEGGS TTTMNWFSWR KPSMIYCKSE PSEVHNPEAA SKSKKKKKQQ QQQLLSSVLT  60
KKSGGGGGGG GGGRSGCSRS IANLKDVVIH GSKRHLQVER PPSCSPRSIG SSEFLNPITH  120
EVILSNNSRC ELKITGCHEA LRTSSAGGSA AAFVGTLRPG TPGPGPAPPR RGGKEGTVPP  180
AVTTKRPSVE NGAVLLLPCQ RCGESFSKWE ALERHHVASH AVTELAEGDS SRKIVEIICR  240
SSWPKSEQPR RCVRIERVLK VHNMQRTVGR FEEYREAVKA KAGKLAKKHP RCLADGNELL  300
RFYGTTVACS LGLNGSSSLC AADKCSVCRI IKDGFCSKRE ISGGGGGGIG VFTTSSSETA  360
LESIDECPGT RKALIVCRVI AGRVHRPLEN IQEIAGQIGF DSLAGKVGLY SNIEELYLLN  420
PKALLPCFVI VCR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267824.1	1e-176	PREDICTED: uncharacterized protein LOC104604941
Refseq	XP_010267825.1	1e-176	PREDICTED: uncharacterized protein LOC104604941
TrEMBL	S8CX88	0.0	S8CX88_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010267823.1	1e-176	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]