PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS69612.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Protein Properties

Length: 152aa MW: 16777.1 Da PI: 9.6441

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS69612.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	90.7	1.1e-28	10	118	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k ltpsdv+k++rlv+pk++ae+ g+ ++ l +ede g +W+++++y+++s++yvltkGW+++vk+++L++gD+v F +++ EPS69612.1 10 FEKPLTPSDVGKLNRLVIPKQHAEKWfpspvlggyggpvAGD--RGLLLAFEDEAGLTWRFRYSYWNSSQSYVLTKGWSRYVKEKKLDAGDIVCFLRHR 106 99*******************9999999999997666444..6779**********************************************888 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 ++ ++l+++ r EPS69612.1 107 ENVGRLFIGCKR 118 899988888665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.1E-38	2	127	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-29	5	119	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.01E-25	8	108	No hit	No description
PROSITE profile	PS50863	12.647	10	120	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-25	10	118	IPR003340	B3 DNA binding domain
SMART	SM01019	8.1E-22	10	119	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MSEEEKHPLF EKPLTPSDVG KLNRLVIPKQ HAEKWFPSPV LGGYGGPVAG DRGLLLAFED 60 EAGLTWRFRY SYWNSSQSYV LTKGWSRYVK EKKLDAGDIV CFLRHRENVG RLFIGCKRAA 120 AASRSSATAA GHPYLGISSL HPSDCSSHAA GK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-42	5	118	3	112	B3 domain-containing transcription factor NGA1
5os9_B	2e-42	5	118	3	112	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006481711.1	3e-55	B3 domain-containing protein At2g36080 isoform X2
Refseq	XP_012468154.1	5e-56	PREDICTED: B3 domain-containing protein At2g36080-like
Refseq	XP_016714835.1	5e-56	PREDICTED: B3 domain-containing protein At2g36080-like
Swissprot	Q9FNI3	7e-51	Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBL	S8EAP5	1e-108	S8EAP5_9LAMI; Uncharacterized protein
STRING	XP_006481711.1	1e-54	(Citrus sinensis)
STRING	Gorai.002G237900.1	2e-55	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3801	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	5e-52	B3 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]